Package: surface
Type: Package
Title: Fitting Hansen Models to Investigate Convergent Evolution
Version: 0.6
Date: 2024-08-19
Authors@R: person(given = "Travis",
                      family = "Ingram",
                      role = c("aut", "cre"),
                      email = "travis.ingram@otago.ac.nz")
Depends: R (>= 2.6), ape, ouch, MASS, geiger
Suggests: igraph
Imports: methods, phytools
Description: This data-driven phylogenetic comparative method fits
        stabilizing selection models to continuous trait data, building
        on the 'ouch' methodology of Butler and King (2004)
        <doi:10.1086/426002>. The main functions fit a series of Hansen
        models using stepwise AIC, then identify cases of convergent
        evolution where multiple lineages have shifted to the same
        adaptive peak. For more information see Ingram and Mahler
        (2013) <doi:10.1111/2041-210X.12034>.
License: GPL (>= 2)
URL: https://www.otago.ac.nz/ecoevotago/research/code/index.html
NeedsCompilation: no
Packaged: 2026-07-15 06:50:23 UTC; root
Author: Travis Ingram [aut, cre]
Maintainer: Travis Ingram <travis.ingram@otago.ac.nz>
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://tingram.r-universe.dev
Date/Publication: 2024-08-20 02:55:10 UTC
RemoteUrl: https://github.com/cran/surface
RemoteRef: HEAD
RemoteSha: 8308983b8c3cbe7acb1d8996231a6748a1995f1b